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Uses of Class de.hu.berlin.wbi.objects.dbSNPNormalized (snp-normalizer)
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<B>Uses of Class<br>de.hu.berlin.wbi.objects.dbSNPNormalized</B></H2>
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Packages that use <A HREF="../../../../../../de/hu/berlin/wbi/objects/dbSNPNormalized.html" title="class in de.hu.berlin.wbi.objects">dbSNPNormalized</A></FONT></TH>
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<TR BGCOLOR="white" CLASS="TableRowColor">
<TD><A HREF="#de.hu.berlin.wbi.objects"><B>de.hu.berlin.wbi.objects</B></A></TD>
<TD>Package with the main data objects.&nbsp;</TD>
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<A NAME="de.hu.berlin.wbi.objects"><!-- --></A>
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Uses of <A HREF="../../../../../../de/hu/berlin/wbi/objects/dbSNPNormalized.html" title="class in de.hu.berlin.wbi.objects">dbSNPNormalized</A> in <A HREF="../../../../../../de/hu/berlin/wbi/objects/package-summary.html">de.hu.berlin.wbi.objects</A></FONT></TH>
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<TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../../../../de/hu/berlin/wbi/objects/package-summary.html">de.hu.berlin.wbi.objects</A> that return types with arguments of type <A HREF="../../../../../../de/hu/berlin/wbi/objects/dbSNPNormalized.html" title="class in de.hu.berlin.wbi.objects">dbSNPNormalized</A></FONT></TH>
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<CODE>static&nbsp;<A HREF="http://java.sun.com/j2se/1.5.0/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../../../../de/hu/berlin/wbi/objects/dbSNPNormalized.html" title="class in de.hu.berlin.wbi.objects">dbSNPNormalized</A>&gt;</CODE></FONT></TD>
<TD><CODE><B>MutationMention.</B><B><A HREF="../../../../../../de/hu/berlin/wbi/objects/MutationMention.html#cleanResults(java.util.List)">cleanResults</A></B>(<A HREF="http://java.sun.com/j2se/1.5.0/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../../../../de/hu/berlin/wbi/objects/dbSNPNormalized.html" title="class in de.hu.berlin.wbi.objects">dbSNPNormalized</A>&gt;&nbsp;snpList)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Sometimes one SNP mention can be normalized to the same dbSNP identifier 
 several times.</TD>
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<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>&nbsp;<A HREF="http://java.sun.com/j2se/1.5.0/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../../../../de/hu/berlin/wbi/objects/dbSNPNormalized.html" title="class in de.hu.berlin.wbi.objects">dbSNPNormalized</A>&gt;</CODE></FONT></TD>
<TD><CODE><B>MutationMention.</B><B><A HREF="../../../../../../de/hu/berlin/wbi/objects/MutationMention.html#getPossibledbSNPs(java.util.List, java.util.List)">getPossibledbSNPs</A></B>(<A HREF="http://java.sun.com/j2se/1.5.0/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../../../../de/hu/berlin/wbi/objects/dbSNP.html" title="class in de.hu.berlin.wbi.objects">dbSNP</A>&gt;&nbsp;candidates,
                  <A HREF="http://java.sun.com/j2se/1.5.0/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../../../../de/hu/berlin/wbi/objects/UniprotFeature.html" title="class in de.hu.berlin.wbi.objects">UniprotFeature</A>&gt;&nbsp;features)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;This method evaluates if some of the <A HREF="../../../../../../de/hu/berlin/wbi/objects/dbSNP.html" title="class in de.hu.berlin.wbi.objects"><CODE>dbSNP</CODE></A> provided in <b>candidates</b>
 actually equals the text-mined <CODE>Mutation</CODE></TD>
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<TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../../../../de/hu/berlin/wbi/objects/package-summary.html">de.hu.berlin.wbi.objects</A> with parameters of type <A HREF="../../../../../../de/hu/berlin/wbi/objects/dbSNPNormalized.html" title="class in de.hu.berlin.wbi.objects">dbSNPNormalized</A></FONT></TH>
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<CODE>&nbsp;int</CODE></FONT></TD>
<TD><CODE><B>dbSNPNormalized.</B><B><A HREF="../../../../../../de/hu/berlin/wbi/objects/dbSNPNormalized.html#compareTo(de.hu.berlin.wbi.objects.dbSNPNormalized)">compareTo</A></B>(<A HREF="../../../../../../de/hu/berlin/wbi/objects/dbSNPNormalized.html" title="class in de.hu.berlin.wbi.objects">dbSNPNormalized</A>&nbsp;that)</CODE>

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&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
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<TH ALIGN="left" COLSPAN="2">Method parameters in <A HREF="../../../../../../de/hu/berlin/wbi/objects/package-summary.html">de.hu.berlin.wbi.objects</A> with type arguments of type <A HREF="../../../../../../de/hu/berlin/wbi/objects/dbSNPNormalized.html" title="class in de.hu.berlin.wbi.objects">dbSNPNormalized</A></FONT></TH>
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<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>static&nbsp;<A HREF="http://java.sun.com/j2se/1.5.0/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../../../../de/hu/berlin/wbi/objects/dbSNPNormalized.html" title="class in de.hu.berlin.wbi.objects">dbSNPNormalized</A>&gt;</CODE></FONT></TD>
<TD><CODE><B>MutationMention.</B><B><A HREF="../../../../../../de/hu/berlin/wbi/objects/MutationMention.html#cleanResults(java.util.List)">cleanResults</A></B>(<A HREF="http://java.sun.com/j2se/1.5.0/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../../../../../de/hu/berlin/wbi/objects/dbSNPNormalized.html" title="class in de.hu.berlin.wbi.objects">dbSNPNormalized</A>&gt;&nbsp;snpList)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Sometimes one SNP mention can be normalized to the same dbSNP identifier 
 several times.</TD>
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